HL_6YLG_058

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAAUUUG

Length

9 nucleotides

Bulged bases

6YLG|1|1|G|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLG_058 not in the Motif Atlas

Homologous match to HL_8C3A_061

Geometric discrepancy: 0.1022

The information below is about HL_8C3A_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6YLG|1|1|C|2776
6YLG|1|1|G|2777
6YLG|1|1|G|2778
6YLG|1|1|A|2779
6YLG|1|1|A|2780
6YLG|1|1|U|2781
6YLG|1|1|U|2782
6YLG|1|1|U|2783
6YLG|1|1|G|2784

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28

Chain i

60S ribosomal protein L36-A