HL_6YLH_039
3D structure
- PDB id
- 6YLH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - full composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CACCUUUG
- Length
- 8 nucleotides
- Bulged bases
- 6YLH|1|1|C|1762, 6YLH|1|1|U|1763, 6YLH|1|1|U|1764, 6YLH|1|1|U|1765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLH_039 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.1324
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
6YLH|1|1|C|1759
6YLH|1|1|A|1760
6YLH|1|1|C|1761
6YLH|1|1|C|1762
6YLH|1|1|U|1763
6YLH|1|1|U|1764
6YLH|1|1|U|1765
6YLH|1|1|G|1766
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- Probable metalloprotease ARX1
- Chain R
- 60S ribosomal protein L19-A
- Chain U
- 60S ribosomal protein L22-A
- Chain X
- 60S ribosomal protein L25
- Chain b
- Nucleolar GTP-binding protein 1
Coloring options: