HL_6YLX_007

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

6YLX|1|1|G|218, 6YLX|1|1|A|219, 6YLX|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLX_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.1413

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6YLX|1|1|G|216
6YLX|1|1|U|217
6YLX|1|1|G|218
6YLX|1|1|A|219
6YLX|1|1|G|220
6YLX|1|1|A|221
6YLX|1|1|A|222
6YLX|1|1|U|223
6YLX|1|1|C|224

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A