HL_6YLX_009
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 6YLX|1|1|G|304, 6YLX|1|1|U|305, 6YLX|1|1|A|306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLX_009 not in the Motif Atlas
- Geometric match to HL_4LX6_002
- Geometric discrepancy: 0.273
- The information below is about HL_4LX6_002
- Detailed Annotation
- Purine riboswitch
- Broad Annotation
- Purine riboswitch
- Motif group
- HL_46333.1
- Basepair signature
- cWW-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
6YLX|1|1|G|303
6YLX|1|1|G|304
6YLX|1|1|U|305
6YLX|1|1|A|306
6YLX|1|1|A|307
6YLX|1|1|A|308
6YLX|1|1|U|309
6YLX|1|1|U|310
6YLX|1|1|C|311
6YLX|1|1|C|312
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain i
- 60S ribosomal protein L36-A
Coloring options: