HL_6YLX_022

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLX_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1957

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6YLX|1|1|C|958
6YLX|1|1|C|959
6YLX|1|1|U|960
6YLX|1|1|C|961
6YLX|1|1|A|962
6YLX|1|1|G|963

Current chains

Chain 1

25S rRNA

Nearby chains

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase