HL_6YLX_059
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6YLX|1|2|A|72, 6YLX|1|2|U|73, 6YLX|1|2|U|74, 6YLX|1|2|A|80, 6YLX|1|2|U|82, 6YLX|1|2|C|83, 6YLX|1|2|C|84, 6YLX|1|2|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLX_059 not in the Motif Atlas
- Geometric match to HL_3HJW_001
- Geometric discrepancy: 0.353
- The information below is about HL_3HJW_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_18423.1
- Basepair signature
- cWW-tSH-tHS-F
- Number of instances in this motif group
- 1
Unit IDs
6YLX|1|2|U|69
6YLX|1|2|G|70
6YLX|1|2|A|71
6YLX|1|2|A|72
6YLX|1|2|U|73
6YLX|1|2|U|74
6YLX|1|2|G|75
6YLX|1|2|C|76
6YLX|1|2|A|77
6YLX|1|2|G|78
6YLX|1|2|A|79
6YLX|1|2|A|80
6YLX|1|2|U|81
6YLX|1|2|U|82
6YLX|1|2|C|83
6YLX|1|2|C|84
6YLX|1|2|G|85
6YLX|1|2|U|86
6YLX|1|2|G|87
6YLX|1|2|A|88
6YLX|1|2|A|89
Current chains
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: