HL_6YLY_009

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAAUUCC

Length

10 nucleotides

Bulged bases

6YLY|1|1|G|304, 6YLY|1|1|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLY_009 not in the Motif Atlas

Homologous match to HL_5TBW_009

Geometric discrepancy: 0.1974

The information below is about HL_5TBW_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6YLY|1|1|G|303
6YLY|1|1|G|304
6YLY|1|1|U|305
6YLY|1|1|A|306
6YLY|1|1|A|307
6YLY|1|1|A|308
6YLY|1|1|U|309
6YLY|1|1|U|310
6YLY|1|1|C|311
6YLY|1|1|C|312

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain i

60S ribosomal protein L36-A