6YLY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6YLY_001 | 1/1/38:45 | No text annotation | geometric HL_4V9F_006 HL_30068.2 | |
| HL_6YLY_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6YLY_003 | 1/1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6YLY_004 | 1/1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_6YLY_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6YLY_006 | 1/1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6YLY_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_6YLY_008 | 1/1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6YLY_009 | 1/1/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_6YLY_010 | 1/1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6YLY_011 | 1/1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6YLY_012 | 1/1/541:550 | No text annotation | ||
| HL_6YLY_013 | 1/1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_6YLY_015 | 1/1/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_6YLY_016 | 1/1/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6YLY_017 | 1/1/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_6YLY_018 | 1/1/763:768 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_6YLY_019 | 1/1/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6YLY_020 | 1/1/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6YLY_021 | 1/1/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_6YLY_022 | 1/1/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6YLY_025 | 1/1/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6YLY_026 | 1/1/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6YLY_027 | 1/1/1238:1250 | No text annotation | geometric HL_3WQY_001 HL_07951.2 | |
| HL_6YLY_028 | 1/1/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_6YLY_029 | 1/1/1347:1357 | No text annotation | homologous HL_5TBW_029 NA | |
| HL_6YLY_030 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6YLY_031 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6YLY_032 | 1/1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_6YLY_071 | 1/1/1544:1549 | No text annotation | homologous HL_8CRE_032 HL_37824.7 | |
| HL_6YLY_035 | 1/1/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6YLY_036 | 1/1/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6YLY_037 | 1/1/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6YLY_038 | 1/1/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_6YLY_069 | 1/1/1760:1765 | No text annotation | homologous HL_8C3A_039 NA | |
| HL_6YLY_040 | 1/1/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6YLY_041 | 1/1/1844:1851 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6YLY_042 | 1/1/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6YLY_043 | 1/1/1923:1928 | UNCG | geometric HL_5TBW_043 NA | |
| HL_6YLY_045 | 1/1/2110:2114 | No text annotation | geometric HL_2Y8Y_001 HL_81100.2 | |
| HL_6YLY_046 | 1/1/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6YLY_047 | 1/1/2162:2172 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_6YLY_050 | 1/1/2534:2545 | No text annotation | ||
| HL_6YLY_051 | 1/1/2568:2573 | No text annotation | ||
| HL_6YLY_052 | 1/1/2776:2784 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
| HL_6YLY_053 | 1/1/2840:2848 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_6YLY_072 | 1/1/2897:2904 | No text annotation | homologous HL_8CRE_061 HL_31585.3 | |
| HL_6YLY_055 | 1/1/2918:2928 | No text annotation | ||
| HL_6YLY_056 | 1/1/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_6YLY_057 | 1/1/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6YLY_058 | 1/1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6YLY_059 | 1/1/3194:3197 | No text annotation | geometric HL_6U8D_003 HL_32346.3 | |
| HL_6YLY_060 | 1/1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_6YLY_061 | 1/1/3300:3314 | No text annotation | ||
| HL_6YLY_070 | 1/1/3350:3353 | Mini UNCG | homologous HL_8P9A_182 HL_48778.2 | |
| HL_6YLY_063 | 1/3/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_93438.2 | |
| HL_6YLY_064 | 1/3/68:91 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_6YLY_065 | 1/3/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6YLY_066 | 1/3/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_6YLY_067 | 1/6/11:17 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6YLY_068 | 1/6/36:43 | No text annotation | geometric HL_7RQB_011 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6YLY_014 | No text annotation | ||
| HL_6YLY_023 | No text annotation | ||
| HL_6YLY_024 | No text annotation | ||
| HL_6YLY_033 | tRNA D-loop | ||
| HL_6YLY_034 | No text annotation | ||
| HL_6YLY_039 | Other HL | ||
| HL_6YLY_044 | No text annotation | ||
| HL_6YLY_048 | No text annotation | ||
| HL_6YLY_049 | No text annotation | ||
| HL_6YLY_054 | No text annotation | ||
| HL_6YLY_062 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6YLY_001 | 1/1/7:8, 1/3/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6YLY_002 | 1/1/13:15, 1/3/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6YLY_003 | 1/1/27:28, 1/1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6YLY_004 | 1/1/31:38, 1/1/45:53 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_6YLY_005 | 1/1/82:89, 1/1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6YLY_006 | 1/1/123:124, 1/1/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6YLY_007 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_5TBW_008 NA | |
| IL_6YLY_008 | 1/1/163:165, 1/1/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_6YLY_009 | 1/1/169:170, 1/1/248:253 | No text annotation | homologous IL_5TBW_010 NA | |
| IL_6YLY_010 | 1/1/177:179, 1/1/237:241 | Major groove platform with extra pair | homologous IL_5TBW_011 NA | |
| IL_6YLY_011 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6YLY_105 | 1/1/337:339, 1/3/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6YLY_013 | 1/1/376:379, 1/1/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_6YLY_014 | 1/1/404:410, 1/3/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6YLY_015 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_6YLY_116 | 1/1/511:513, 1/1/577:580 | Isolated non-canonical cWW pair | geometric IL_8E4X_001 NA | |
| IL_6YLY_018 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6YLY_019 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_6YLY_020 | 1/1/667:670, 1/1/792:795 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6YLY_021 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6YLY_022 | 1/1/725:728, 1/1/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_6YLY_023 | 1/1/752:753, 1/1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6YLY_106 | 1/1/753:757, 1/1/774:779 | Triple non-canonical cWW pairs | geometric IL_8S95_002 IL_49751.4 | |
| IL_6YLY_024 | 1/1/755:757, 1/1/774:777 | Isolated non-canonical cWW pair | geometric IL_4V83_235 IL_07785.1 | |
| IL_6YLY_025 | 1/1/758:763, 1/1/768:773 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_6YLY_026 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_87907.2 | |
| IL_6YLY_027 | 1/1/805:809, 1/1/931:938 | No text annotation | ||
| IL_6YLY_028 | 1/1/833:834, 1/1/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6YLY_029 | 1/1/834:838, 1/1/855:859 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6YLY_030 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_6YLY_031 | 1/1/873:875, 1/1/886:887 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_6YLY_032 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_6YLY_033 | 1/1/954:956, 1/1/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_6YLY_034 | 1/1/969:970, 1/1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_6YLY_035 | 1/1/977:982, 1/1/1101:1104 | No text annotation | ||
| IL_6YLY_108 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6YLY_037 | 1/1/1120:1122, 1/1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_6YLY_038 | 1/1/1123:1125, 1/1/1133:1135 | No text annotation | homologous IL_8C3A_050 NA | |
| IL_6YLY_109 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6YLY_040 | 1/1/1173:1182, 1/1/1324:1326 | Isolated non-canonical cWW pair | geometric IL_4M4O_002 IL_87907.2 | |
| IL_6YLY_041 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_6YLY_042 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | homologous IL_8P9A_280 IL_83149.1 | |
| IL_6YLY_043 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_6YLY_044 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_6YLY_045 | 1/1/1232:1234, 1/1/1255:1256 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6YLY_046 | 1/1/1234:1238, 1/1/1250:1255 | No text annotation | ||
| IL_6YLY_047 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6YLY_048 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6YLY_049 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6YLY_050 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6YLY_051 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6YLY_111 | 1/1/1501:1505, 1/1/1513:1515 | C-loop | homologous IL_8C3A_482 NA | |
| IL_6YLY_053 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6YLY_054 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_6YLY_055 | 1/1/1623:1624, 1/1/1819:1822 | Major groove platform related | homologous IL_8P9A_293 IL_48076.6 | |
| IL_6YLY_056 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation | homologous IL_5TBW_066 NA | |
| IL_6YLY_057 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_6YLY_058 | 1/1/1661:1663, 1/1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_6YLY_059 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6YLY_060 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6YLY_112 | 1/1/1670:1673, 1/1/1774:1778 | No text annotation | ||
| IL_6YLY_061 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_6YLY_062 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6YLY_063 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6YLY_064 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6YLY_065 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_6YLY_066 | 1/1/1901:1906, 1/1/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6YLY_113 | 1/1/1918:1923, 1/1/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6YLY_068 | 1/1/1940:1942, 1/1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6YLY_069 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6YLY_070 | 1/1/1951:1953, 1/1/2094:2095 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_6YLY_071 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6YLY_072 | 1/1/2156:2161, 1/1/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6YLY_073 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6YLY_074 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6YLY_075 | 1/1/2770:2773, 1/1/2787:2788 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_6YLY_076 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6YLY_077 | 1/1/2889:2891, 1/1/2912:2914 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
| IL_6YLY_078 | 1/1/2891:2893, 1/1/2908:2912 | No text annotation | ||
| IL_6YLY_079 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_6YLY_080 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_6YLY_081 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6YLY_082 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_6YLY_083 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_6YLY_084 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6YLY_085 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_6YLY_086 | 1/1/3164:3166, 1/1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_6YLY_087 | 1/1/3168:3170, 1/1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_6YLY_088 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_6YLY_089 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_6YLY_090 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_6YLY_091 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | homologous IL_5TBW_126 NA | |
| IL_6YLY_092 | 1/1/3233:3235, 1/1/3252:3254 | Isolated non-canonical cWW pair | homologous IL_5TBW_127 NA | |
| IL_6YLY_093 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_77658.1 | |
| IL_6YLY_094 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_6YLY_095 | 1/1/3324:3326, 1/1/3380:3383 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_6YLY_096 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_6YLY_097 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_6YLY_098 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_6YLY_099 | 1/1/3342:3345, 1/1/3360:3363 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_6YLY_100 | 1/1/3347:3350, 1/1/3356:3358 | No text annotation | ||
| IL_6YLY_117 | 1/1/3348:3350, 1/1/3353:3357 | Isolated non-canonical cWW pair | geometric IL_5UNE_006 IL_87907.2 | |
| IL_6YLY_101 | 1/3/64:66, 1/3/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6YLY_102 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_6YLY_103 | 1/6/30:34, 1/6/45:48 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6YLY_104 | No text annotation | ||
| IL_6YLY_012 | Isolated non-canonical cWW pair | ||
| IL_6YLY_016 | Kink-turn related | ||
| IL_6YLY_017 | Tandem non-canonical cWW pairs | ||
| IL_6YLY_107 | Isolated non-canonical cWW pair | ||
| IL_6YLY_036 | Isolated non-canonical cWW pair | ||
| IL_6YLY_039 | UAA/GAN with extra cWW | ||
| IL_6YLY_110 | No text annotation | ||
| IL_6YLY_052 | No text annotation | ||
| IL_6YLY_067 | No text annotation | ||
| IL_6YLY_114 | Other IL | ||
| IL_6YLY_115 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6YLY_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_6YLY_017 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_6YLY_018 | 1/1/340:356, 1/1/363:368, 1/3/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6YLY_002 | 1/1/369:376, 1/1/403:404, 1/3/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6YLY_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6YLY_004 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_6YLY_005 | 1/1/828:831, 1/1/863:867, 1/1/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6YLY_019 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_6YLY_006 | 1/1/1230:1232, 1/1/1256:1266, 1/1/1275:1279 | No text annotation | ||
| J3_6YLY_007 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6YLY_008 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6YLY_024 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_6YLY_025 | 1/1/1537:1542, 1/1/1551:1561, 1/1/1578:1584 | No text annotation | homologous J3_8CRE_016 J3_65403.1 | |
| J3_6YLY_010 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6YLY_021 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6YLY_012 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_6YLY_013 | 1/1/2529:2532, 1/1/2547:2563, 1/1/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_6YLY_014 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6YLY_022 | 1/1/3170:3176, 1/1/3212:3220, 1/1/3265:3280 | No text annotation | ||
| J3_6YLY_015 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_6YLY_023 | 1/3/44:45, 1/3/58:64, 1/3/96:100 | No text annotation | homologous J3_8P4V_024 NA | |
| J4_6YLY_007 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6YLY_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_6YLY_008 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | homologous J4_8CRE_003 J4_87855.1 | |
| J4_6YLY_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_6YLY_005 | 1/1/1674:1675, 1/1/1693:1698, 1/1/1747:1753, 1/1/1772:1773 | No text annotation | ||
| J4_6YLY_006 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J5_6YLY_001 | 1/1/20:22, 1/3/35:42, 1/3/102:107, 1/3/115:116, 1/3/137:139 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_6YLY_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6YLY_003 | 1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_6YLY_004 | 1/1/1492:1496, 1/1/1520:1531, 1/1/1591:1595, 1/1/1612:1615, 1/1/1829:1836 | No text annotation | ||
| J5_6YLY_005 | 1/1/1898:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2337 | No text annotation | ||
| J5_6YLY_006 | 1/1/1901:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2336 | No text annotation | ||
| J6_6YLY_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/3/32:35 | No text annotation | ||
| J7_6YLY_001 | 1/1/949:954, 1/1/967:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6YLY_009 | No text annotation | ||
| J3_6YLY_020 | No text annotation | ||
| J3_6YLY_011 | No text annotation | ||
| J3_6YLY_016 | No text annotation | ||
| J4_6YLY_001 | No text annotation | ||
| J4_6YLY_003 | No text annotation |
Coloring options: