HL_6YLY_012

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

6YLY|1|1|U|545, 6YLY|1|1|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLY|1|1|U|541
6YLY|1|1|G|542
6YLY|1|1|C|543
6YLY|1|1|C|544
6YLY|1|1|U|545
6YLY|1|1|C|546
6YLY|1|1|G|547
6YLY|1|1|G|548
6YLY|1|1|U|549
6YLY|1|1|A|550

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain S

60S ribosomal protein L20-A