HL_6YLY_025

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

6YLY|1|1|G|1131

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLY_025 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.5249

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6YLY|1|1|G|1126
6YLY|1|1|G|1127
6YLY|1|1|U|1128
6YLY|1|1|A|1129
6YLY|1|1|A|1130
6YLY|1|1|G|1131
6YLY|1|1|C|1132

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1

Chain s

Nuclear GTP-binding protein NUG1