HL_6YLY_034

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUGACAGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLY|1|1|C|1562
6YLY|1|1|C|1563
6YLY|1|1|U|1564
6YLY|1|1|G|1565
6YLY|1|1|A|1566
6YLY|1|1|C|1574
6YLY|1|1|A|1575
6YLY|1|1|G|1576
6YLY|1|1|G|1577

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L8-A

Chain X

60S ribosomal protein L25

Chain n

Pescadillo homolog

Chain q

Ribosome biogenesis protein NOP53