HL_6YLY_037

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

6YLY|1|1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLY_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2118

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6YLY|1|1|G|1680
6YLY|1|1|U|1681
6YLY|1|1|U|1682
6YLY|1|1|A|1683
6YLY|1|1|U|1684
6YLY|1|1|C|1685
6YLY|1|1|U|1686
6YLY|1|1|U|1687
6YLY|1|1|U|1688

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A

Chain u

Ribosome biogenesis protein RLP24