HL_6YLY_039

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6YLY|1|1|C|1762, 6YLY|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLY_039 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3993

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6YLY|1|1|C|1759
6YLY|1|1|A|1760
6YLY|1|1|C|1761
6YLY|1|1|C|1762
6YLY|1|1|U|1763
6YLY|1|1|U|1764
6YLY|1|1|U|1765
6YLY|1|1|G|1766

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A