HL_6YLY_049

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLY_049 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2558

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6YLY|1|1|C|2444
6YLY|1|1|A|2445
6YLY|1|1|U|2501
6YLY|1|1|A|2502
6YLY|1|1|G|2503

Current chains

Chain 1

25S rRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain i

60S ribosomal protein L36-A