HL_6YLY_053

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6YLY|1|1|U|2842

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLY_053 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3569

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6YLY|1|1|C|2840
6YLY|1|1|G|2841
6YLY|1|1|U|2842
6YLY|1|1|U|2843
6YLY|1|1|C|2844
6YLY|1|1|A|2845
6YLY|1|1|U|2846
6YLY|1|1|A|2847
6YLY|1|1|G|2848

Current chains

Chain 1

25S rRNA

Nearby chains

Chain S

60S ribosomal protein L20-A

Chain s

Nuclear GTP-binding protein NUG1