HL_6YLY_066
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAUUC
- Length
- 6 nucleotides
- Bulged bases
- 6YLY|1|3|U|125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLY_066 not in the Motif Atlas
- Homologous match to HL_5TBW_076
- Geometric discrepancy: 0.3066
- The information below is about HL_5TBW_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_45177.3
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6YLY|1|3|G|124
6YLY|1|3|U|125
6YLY|1|3|A|126
6YLY|1|3|U|127
6YLY|1|3|U|128
6YLY|1|3|C|129
Current chains
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S ribosomal protein L25
- Chain n
- Pescadillo homolog
- Chain q
- Ribosome biogenesis protein NOP53
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