HL_6YMI_002
3D structure
- PDB id
- 6YMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the SAM-SAH riboswitch with AMP
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CGGCUUCCUG
- Length
- 10 nucleotides
- Bulged bases
- 6YMI|1|C|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YMI_002 not in the Motif Atlas
- Geometric match to HL_6YML_001
- Geometric discrepancy: 0.1099
- The information below is about HL_6YML_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35677.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6YMI|1|C|C|15
6YMI|1|C|G|16
6YMI|1|C|G|17
6YMI|1|C|C|18
6YMI|1|C|U|19
6YMI|1|C|U|20
6YMI|1|C|C|21
6YMI|1|C|C|22
6YMI|1|C|U|23
6YMI|1|C|G|24
Current chains
- Chain C
- Chains: A,C,F,I,M,O
Nearby chains
- Chain D
- Chains: B,D,G,J,N,P
- Chain M
- Chains: A,C,F,I,M,O
- Chain N
- Chains: B,D,G,J,N,P
Coloring options: