HL_6YPU_006

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YPU_006 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0789

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YPU|1|2|G|316
6YPU|1|2|A|317
6YPU|1|2|C|318
6YPU|1|2|U|319
6YPU|1|2|G|320
6YPU|1|2|A|321
6YPU|1|2|G|322
6YPU|1|2|A|323
6YPU|1|2|C|324
6YPU|1|2|A|325
6YPU|1|2|C|326
6YPU|1|2|G|327
6YPU|1|2|G|328
6YPU|1|2|C|329

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20