RNA 3D Hub //

6YPU Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6YPU_0011/2/14:24No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_6YPU_0021/2/154:159GNRA
homologous
HL_5J7L_003
HL_37824.8
HL_6YPU_0031/2/182:187UNCG
geometric
HL_5Y85_004
HL_34617.5
HL_6YPU_0041/2/254:264No text annotation
HL_6YPU_0051/2/292:297GNRA
homologous
HL_4LFB_007
HL_37824.8
HL_6YPU_0061/2/316:329No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_6YPU_0071/2/338:343UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_6YPU_0081/2/375:380GNRA
homologous
HL_5J7L_010
HL_37824.8
HL_6YPU_0091/2/415:420UNCG
homologous
HL_4LFB_011
HL_34617.5
HL_6YPU_0101/2/458:466GNRA wlth extra near cWW
homologous
HL_5J7L_012
HL_81538.2
HL_6YPU_0111/2/519:524No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_6YPU_0121/2/614:620GNRA-like with tWH
homologous
HL_4LFB_014
HL_10453.3
HL_6YPU_0131/2/686:695No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_6YPU_0141/2/723:728GNRA
homologous
HL_5J7L_016
HL_37824.8
HL_6YPU_0151/2/783:793No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_6YPU_0161/2/859:864GNRA
homologous
HL_4LFB_019
HL_37824.8
HL_6YPU_0171/2/894:899GNRA
homologous
HL_4LFB_020
HL_37824.8
HL_6YPU_0181/4/1446:1451UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_6YPU_0191/4/1512:1517GNRA
homologous
HL_6CZR_103
NA

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6YPU_0011/2/32:34,
1/2/549:550		Single bulged G
homologous
IL_5J7L_001
IL_00225.14
IL_6YPU_0021/2/46:47,
1/2/392:394		Single bulged A
homologous
IL_5J7L_002
IL_31462.7
IL_6YPU_0031/2/49:54,
1/2/355:357		No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_6YPU_0041/2/56:58,
1/2/352:353		Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_6YPU_0051/2/65:68,
1/2/99:100		Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.5
IL_6YPU_0061/2/69:71,
1/2/96:98		Isolated non-canonical cWW pair
homologous
IL_6CZR_118
NA
IL_6YPU_0071/2/73:77,
1/2/90:94		No text annotation
geometric
IL_5TBW_121
NA
IL_6YPU_0081/2/120:122,
1/2/231:233		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_87907.2
IL_6YPU_0091/2/124:127,
1/2/227:229		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_6YPU_0101/2/128:132,
1/2/223:226		Minor groove platform related
homologous
IL_5J7L_010
IL_64231.5
IL_6YPU_0111/2/140:143,
1/2/171:174		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_85033.2
IL_6YPU_0121/2/143:149,
1/2/164:171		tWH-tWH-tHW-tHW
homologous
IL_6CZR_121
NA
IL_6YPU_0131/2/238:243,
1/2/273:280		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_6YPU_0481/2/245:248,
1/2/270:271		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_6YPU_0151/2/288:289,
1/2/300:304		C-loop
homologous
IL_6CZR_125
NA
IL_6YPU_0161/2/363:365,
1/2/388:389		Single bulged U
homologous
IL_5J7L_017
IL_89505.4
IL_6YPU_0171/2/367:371,
1/2/385:386		C-loop
homologous
IL_5J7L_018
IL_03109.3
IL_6YPU_0181/2/371:372,
1/2/383:385		Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_6YPU_0191/2/405:412,
1/2/423:429		No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_6YPU_0201/2/436:438,
1/2/489:494		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_6YPU_0211/2/442:446,
1/2/480:485		tSH-tHW-tWW
geometric
IL_5J7L_022
IL_88269.4
IL_6YPU_0221/2/446:449,
1/2/476:480		No text annotation
IL_6YPU_0231/2/452:453,
1/2/471:473		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_6YPU_0241/2/501:508,
1/2/537:538		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_6YPU_0251/2/512:518,
1/2/525:533		Kink-turn related
geometric
IL_4V88_415
NA
IL_6YPU_0491/2/566:572,
1/2/877:878		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_6YPU_0261/2/577:581,
1/2/754:758		tSH-tHW-tHS
homologous
IL_4LFB_023
IL_17136.7
IL_6YPU_0271/2/591:593,
1/2/641:642		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_6YPU_0281/2/594:595,
1/2/637:640		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_6YPU_0291/2/602:609,
1/2/625:630		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_6YPU_0301/2/656:657,
1/2/742:744		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_6YPU_0311/2/659:663,
1/2/737:740		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_6YPU_0501/2/670:674,
1/2/710:714		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_6YPU_0331/2/681:685,
1/2/696:703		Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_6YPU_0341/2/771:775,
1/2/801:802		Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_6YPU_0351/2/776:780,
1/2/796:800		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_6YPU_0361/2/884:891,
1/2/902:907		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_6YPU_0371/2/919:920,
1/4/1390:1392		Single bulged A
homologous
IL_4LFB_035
IL_31462.7
IL_6YPU_0381/4/1396:1398,
1/4/1498:1501		No text annotation
homologous
IL_5J7L_058
IL_61438.4
IL_6YPU_0391/4/1398:1401,
1/4/1494:1498		No text annotation
geometric
IL_4V88_464
NA
IL_6YPU_0401/4/1402:1404,
1/4/1491:1493		Isolated non-canonical cWW pair
geometric
IL_1ZZ5_002
IL_87907.2
IL_6YPU_0411/4/1404:1406,
1/4/1488:1491		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_6YPU_0421/4/1409:1411,
1/4/1483:1485		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_6YPU_0431/4/1413:1416,
1/4/1478:1481		Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_6YPU_0441/4/1418:1420,
1/4/1474:1476		Isolated non-canonical cWW pair
geometric
IL_3TD0_001
IL_28037.2
IL_6YPU_0451/4/1427:1432,
1/4/1463:1467		Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_6YPU_0461/4/1437:1439,
1/4/1457:1458		Single bulged A
geometric
IL_7RQB_062
NA
IL_6YPU_0471/4/1442:1445,
1/4/1452:1454		No text annotation
homologous
IL_5J7L_065
IL_31531.3

Problematic loops

#loop idProblemSequence
IL_6YPU_014No text annotation
IL_6YPU_032No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6YPU_0011/2/48:49,
1/2/357:363,
1/2/389:391		No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_6YPU_0051/2/48:54,
1/2/355:363,
1/2/389:391		No text annotation
homologous
J3_5J7L_050
J3_46317.4
J3_6YPU_0021/2/583:585,
1/2/648:652,
1/2/748:752		No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_6YPU_0031/2/669:670,
1/2/714:722,
1/2/729:731		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_6YPU_0041/2/823:826,
1/2/854:858,
1/2/865:871		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J4_6YPU_0011/2/111:118,
1/2/235:236,
1/2/282:285,
1/2/307:308		No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_6YPU_0041/2/139:140,
1/2/174:180,
1/2/189:194,
1/2/215:216		No text annotation
J4_6YPU_0031/2/572:574,
1/2/761:766,
1/2/807:818,
1/2/876:877		No text annotation
homologous
J4_5J7L_003
J4_61885.6
J5_6YPU_0011/2/38:41,
1/2/399:402,
1/2/432:438,
1/2/489:497,
1/2/542:545		No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_6YPU_0021/2/60:63,
1/2/102:109,
1/2/310:312,
1/2/333:335,
1/2/346:350		No text annotation
homologous
J5_4LFB_002
J5_59910.6

Problematic loops

#loop idProblemSequence
J4_6YPU_002No text annotation

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