HL_6YPU_012

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUUAAC

Length

7 nucleotides

Bulged bases

6YPU|1|2|U|616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YPU_012 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.128

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6YPU|1|2|G|614
6YPU|1|2|C|615
6YPU|1|2|U|616
6YPU|1|2|U|617
6YPU|1|2|A|618
6YPU|1|2|A|619
6YPU|1|2|C|620

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain q

30S ribosomal protein S16