HL_6YS3_011

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6YS3|1|b|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YS3_011 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.0985

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6YS3|1|b|C|305
6YS3|1|b|U|306
6YS3|1|b|G|307
6YS3|1|b|G|308
6YS3|1|b|A|309
6YS3|1|b|A|310
6YS3|1|b|A|311
6YS3|1|b|G|312

Current chains

Chain b

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L24