HL_6YS3_028

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

6YS3|1|b|U|960, 6YS3|1|b|C|963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YS3_028 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1117

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6YS3|1|b|U|957
6YS3|1|b|G|958
6YS3|1|b|C|959
6YS3|1|b|U|960
6YS3|1|b|A|961
6YS3|1|b|A|962
6YS3|1|b|C|963
6YS3|1|b|G|964

Current chains

Chain b

23S rRNA

Nearby chains

Chain a

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16