HL_6YS3_059
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GCGAAAGC
- Length
- 8 nucleotides
- Bulged bases
- 6YS3|1|b|A|2380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YS3_059 not in the Motif Atlas
- Geometric match to HL_8H9D_001
- Geometric discrepancy: 0.1888
- The information below is about HL_8H9D_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6YS3|1|b|G|2377
6YS3|1|b|C|2378
6YS3|1|b|G|2379
6YS3|1|b|A|2380
6YS3|1|b|A|2381
6YS3|1|b|A|2382
6YS3|1|b|G|2383
6YS3|1|b|C|2384
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L33
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain o
- 50S ribosomal protein L18
- Chain y
- 50S ribosomal protein L27
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