HL_6YS3_062

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6YS3|1|b|G|2533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YS3_062 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.091

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6YS3|1|b|U|2532
6YS3|1|b|G|2533
6YS3|1|b|A|2534
6YS3|1|b|A|2535
6YS3|1|b|G|2536
6YS3|1|b|U|2537
6YS3|1|b|A|2538
6YS3|1|b|G|2539

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L6