HL_6YS5_001
3D structure
- PDB id
- 6YS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 6YS5|1|3|G|968
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YS5_001 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.1092
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YS5|1|3|G|960
6YS5|1|3|A|961
6YS5|1|3|U|962
6YS5|1|3|G|963
6YS5|1|3|C|964
6YS5|1|3|A|965
6YS5|1|3|A|966
6YS5|1|3|C|967
6YS5|1|3|G|968
6YS5|1|3|C|969
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S13
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