HL_6YS5_005

3D structure

PDB id

6YS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUCGGA

Length

7 nucleotides

Bulged bases

6YS5|1|3|U|1133, 6YS5|1|3|G|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YS5_005 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2956

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

6YS5|1|3|U|1131
6YS5|1|3|U|1132
6YS5|1|3|U|1133
6YS5|1|3|C|1134
6YS5|1|3|G|1135
6YS5|1|3|G|1136
6YS5|1|3|A|1137

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S9