HL_6YSI_011

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUGAUAUUC

Length

9 nucleotides

Bulged bases

6YSI|1|1|G|324, 6YSI|1|1|A|325, 6YSI|1|1|U|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSI_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0794

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6YSI|1|1|G|322
6YSI|1|1|U|323
6YSI|1|1|G|324
6YSI|1|1|A|325
6YSI|1|1|U|326
6YSI|1|1|A|327
6YSI|1|1|U|328
6YSI|1|1|U|329
6YSI|1|1|C|330

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain Q

50S ribosomal protein L24