HL_6YSI_053
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UAUAAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YSI_053 not in the Motif Atlas
- Homologous match to HL_5J7L_189
- Geometric discrepancy: 0.107
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
6YSI|1|1|U|2313
6YSI|1|1|A|2314
6YSI|1|1|U|2315
6YSI|1|1|A|2316
6YSI|1|1|A|2317
6YSI|1|1|A|2318
6YSI|1|1|G|2319
6YSI|1|1|G|2320
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L27
Coloring options: