HL_6YSI_056
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGUAUGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 6YSI|1|1|U|2395
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YSI_056 not in the Motif Atlas
- Homologous match to HL_5J7L_192
- Geometric discrepancy: 0.0548
- The information below is about HL_5J7L_192
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53454.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6YSI|1|1|U|2393
6YSI|1|1|G|2394
6YSI|1|1|U|2395
6YSI|1|1|A|2396
6YSI|1|1|U|2397
6YSI|1|1|G|2398
6YSI|1|1|G|2399
6YSI|1|1|A|2400
6YSI|1|1|A|2401
6YSI|1|1|G|2402
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L15
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