HL_6YSR_010

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6YSR|1|A|G|329, 6YSR|1|A|A|330, 6YSR|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSR_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0966

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6YSR|1|A|G|327
6YSR|1|A|U|328
6YSR|1|A|G|329
6YSR|1|A|A|330
6YSR|1|A|C|331
6YSR|1|A|A|332
6YSR|1|A|G|333
6YSR|1|A|C|334
6YSR|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24