3D structure

PDB id
6YSR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 stalled ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YSR_062 not in the Motif Atlas
Homologous match to HL_5J7L_196
Geometric discrepancy: 0.1015
The information below is about HL_5J7L_196
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6YSR|1|A|C|2594
6YSR|1|A|G|2595
6YSR|1|A|U|2596
6YSR|1|A|G|2597
6YSR|1|A|A|2598
6YSR|1|A|G|2599

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain w
Transfer RNA; tRNA

Coloring options:


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