HL_6YSR_078

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSR_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0785

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YSR|1|a|A|320
6YSR|1|a|A|321
6YSR|1|a|C|322
6YSR|1|a|U|323
6YSR|1|a|G|324
6YSR|1|a|A|325
6YSR|1|a|G|326
6YSR|1|a|A|327
6YSR|1|a|C|328
6YSR|1|a|A|329
6YSR|1|a|C|330
6YSR|1|a|G|331
6YSR|1|a|G|332
6YSR|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20