HL_6YSS_053

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6YSS|1|A|A|2268, 6YSS|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSS_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0658

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6YSS|1|A|C|2264
6YSS|1|A|U|2265
6YSS|1|A|A|2266
6YSS|1|A|A|2267
6YSS|1|A|A|2268
6YSS|1|A|G|2269
6YSS|1|A|A|2270
6YSS|1|A|G|2271
6YSS|1|A|U|2272
6YSS|1|A|A|2273
6YSS|1|A|A|2274
6YSS|1|A|C|2275
6YSS|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27