HL_6YSS_078

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSS_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.07

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YSS|1|a|A|320
6YSS|1|a|A|321
6YSS|1|a|C|322
6YSS|1|a|U|323
6YSS|1|a|G|324
6YSS|1|a|A|325
6YSS|1|a|G|326
6YSS|1|a|A|327
6YSS|1|a|C|328
6YSS|1|a|A|329
6YSS|1|a|C|330
6YSS|1|a|G|331
6YSS|1|a|G|332
6YSS|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20