HL_6YSS_088

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6YSS|1|a|C|841, 6YSS|1|a|U|842, 6YSS|1|a|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSS_088 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3122

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6YSS|1|a|C|840
6YSS|1|a|C|841
6YSS|1|a|U|842
6YSS|1|a|U|843
6YSS|1|a|G|844
6YSS|1|a|A|845
6YSS|1|a|G|846

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S18