HL_6YST_052

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6YST|1|A|A|2268, 6YST|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YST_052 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1209

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6YST|1|A|C|2264
6YST|1|A|U|2265
6YST|1|A|A|2266
6YST|1|A|A|2267
6YST|1|A|A|2268
6YST|1|A|G|2269
6YST|1|A|A|2270
6YST|1|A|G|2271
6YST|1|A|U|2272
6YST|1|A|A|2273
6YST|1|A|A|2274
6YST|1|A|C|2275
6YST|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27