HL_6YST_064

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6YST|1|A|G|2751, 6YST|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YST_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0868

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6YST|1|A|C|2745
6YST|1|A|U|2746
6YST|1|A|G|2747
6YST|1|A|A|2748
6YST|1|A|A|2749
6YST|1|A|A|2750
6YST|1|A|G|2751
6YST|1|A|C|2752
6YST|1|A|A|2753
6YST|1|A|U|2754
6YST|1|A|C|2755
6YST|1|A|U|2756
6YST|1|A|A|2757
6YST|1|A|A|2758
6YST|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13