HL_6YST_074

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGGGACCUUCGGGCCUC

Length

18 nucleotides

Bulged bases

6YST|1|a|G|204, 6YST|1|a|A|205, 6YST|1|a|C|206, 6YST|1|a|U|209, 6YST|1|a|G|211, 6YST|1|a|C|215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YST_074 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.5896

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

6YST|1|a|G|200
6YST|1|a|G|201
6YST|1|a|G|202
6YST|1|a|G|203
6YST|1|a|G|204
6YST|1|a|A|205
6YST|1|a|C|206
6YST|1|a|C|207
6YST|1|a|U|208
6YST|1|a|U|209
6YST|1|a|C|210
6YST|1|a|G|211
6YST|1|a|G|212
6YST|1|a|G|213
6YST|1|a|C|214
6YST|1|a|C|215
6YST|1|a|U|216
6YST|1|a|C|217

Current chains

Chain a

16S ribosomal RNA

Nearby chains