HL_6YST_087

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6YST|1|a|C|841, 6YST|1|a|U|842, 6YST|1|a|U|843, 6YST|1|a|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YST_087 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3565

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6YST|1|a|C|840
6YST|1|a|C|841
6YST|1|a|U|842
6YST|1|a|U|843
6YST|1|a|G|844
6YST|1|a|A|845
6YST|1|a|G|846

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain r

30S ribosomal protein S18