3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAU(2MG)(5MC)AACGC
Length
10 nucleotides
Bulged bases
6YST|1|a|A|968, 6YST|1|a|G|971
QA status
Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YST_090 not in the Motif Atlas
Homologous match to HL_5J7L_021
Geometric discrepancy: 0.5509
The information below is about HL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6YST|1|a|G|963
6YST|1|a|A|964
6YST|1|a|U|965
6YST|1|a|2MG|966
6YST|1|a|5MC|967
6YST|1|a|A|968
6YST|1|a|A|969
6YST|1|a|C|970
6YST|1|a|G|971
6YST|1|a|C|972

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain m
30S ribosomal protein S13
Chain n
30S ribosomal protein S14
Chain w
Transfer RNA; tRNA

Coloring options:


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