3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAGCC(G7M)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YST_106 not in the Motif Atlas
Homologous match to HL_5J7L_205
Geometric discrepancy: 0.1196
The information below is about HL_5J7L_205
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6YST|1|a|C|522
6YST|1|a|A|523
6YST|1|a|G|524
6YST|1|a|C|525
6YST|1|a|C|526
6YST|1|a|G7M|527

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain l
30S ribosomal protein S12
Chain y
Alternative stalled-ribosome rescue factor B

Coloring options:


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