HL_6YSU_065

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6YSU|1|A|G|2751, 6YSU|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSU_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1055

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6YSU|1|A|C|2745
6YSU|1|A|U|2746
6YSU|1|A|G|2747
6YSU|1|A|A|2748
6YSU|1|A|A|2749
6YSU|1|A|A|2750
6YSU|1|A|G|2751
6YSU|1|A|C|2752
6YSU|1|A|A|2753
6YSU|1|A|U|2754
6YSU|1|A|C|2755
6YSU|1|A|U|2756
6YSU|1|A|A|2757
6YSU|1|A|A|2758
6YSU|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13