HL_6YSU_082

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6YSU|1|a|A|465, 6YSU|1|a|U|467, 6YSU|1|a|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSU_082 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3887

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6YSU|1|a|G|462
6YSU|1|a|U|463
6YSU|1|a|U|464
6YSU|1|a|A|465
6YSU|1|a|A|466
6YSU|1|a|U|467
6YSU|1|a|A|468
6YSU|1|a|C|469
6YSU|1|a|C|470

Current chains

Chain a

16S ribosomal RNA

Nearby chains