HL_6YSU_095

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

6YSU|1|a|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSU_095 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3541

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6YSU|1|a|G|1133
6YSU|1|a|G|1134
6YSU|1|a|U|1135
6YSU|1|a|C|1136
6YSU|1|a|C|1137
6YSU|1|a|G|1138
6YSU|1|a|G|1139
6YSU|1|a|C|1140
6YSU|1|a|C|1141

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9