HL_6YSU_102
3D structure
- PDB id
- 6YSU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 6YSU|1|w|G|18, 6YSU|1|w|G|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YSU_102 not in the Motif Atlas
- Homologous match to HL_5HR6_001
- Geometric discrepancy: 0.4498
- The information below is about HL_5HR6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78347.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6YSU|1|w|C|13
6YSU|1|w|A|14
6YSU|1|w|G|15
6YSU|1|w|U|16
6YSU|1|w|C|17
6YSU|1|w|G|18
6YSU|1|w|G|19
6YSU|1|w|U|20
6YSU|1|w|A|21
6YSU|1|w|G|22
Current chains
- Chain w
- P-site tRNAPhe
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
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