HL_6YT9_006

3D structure

PDB id

6YT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YT9_006 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0806

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YT9|1|2|G|316
6YT9|1|2|A|317
6YT9|1|2|C|318
6YT9|1|2|U|319
6YT9|1|2|G|320
6YT9|1|2|A|321
6YT9|1|2|G|322
6YT9|1|2|A|323
6YT9|1|2|C|324
6YT9|1|2|A|325
6YT9|1|2|C|326
6YT9|1|2|G|327
6YT9|1|2|G|328
6YT9|1|2|C|329

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20