HL_6Z1P_006

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUGGAAAAA

Length

10 nucleotides

Bulged bases

6Z1P|1|Aa|A|242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_006 not in the Motif Atlas

Geometric match to HL_4V88_219

Geometric discrepancy: 0.2317

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

6Z1P|1|Aa|U|235
6Z1P|1|Aa|U|236
6Z1P|1|Aa|U|237
6Z1P|1|Aa|G|238
6Z1P|1|Aa|G|239
6Z1P|1|Aa|A|240
6Z1P|1|Aa|A|241
6Z1P|1|Aa|A|242
6Z1P|1|Aa|A|243
6Z1P|1|Aa|A|244

Current chains

Chain Aa

LSU rRNA_1

Nearby chains

Chain AV

Iron-binding zinc finger CDGSH type protein

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Ay

50S ribosomal protein L24