HL_6Z1P_010

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUCUACC

Length

8 nucleotides

Bulged bases

6Z1P|1|Ab|A|318, 6Z1P|1|Ab|U|319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_010 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.4299

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6Z1P|1|Ab|G|317
6Z1P|1|Ab|A|318
6Z1P|1|Ab|U|319
6Z1P|1|Ab|C|320
6Z1P|1|Ab|U|321
6Z1P|1|Ab|A|322
6Z1P|1|Ab|C|323
6Z1P|1|Ab|C|324

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AO

mL64

Chain Aa

LSU rRNA_1