HL_6Z1P_017

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUUAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_017 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3878

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6Z1P|1|Ab|A|591
6Z1P|1|Ab|U|592
6Z1P|1|Ab|U|593
6Z1P|1|Ab|U|594
6Z1P|1|Ab|A|595
6Z1P|1|Ab|U|596

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AB

Ribosomal protein L28

Chain Bo

30S ribosomal protein S15

Chain Bq

30S ribosomal protein S17