HL_6Z1P_027

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_027 not in the Motif Atlas

Geometric match to HL_5J7L_004

Geometric discrepancy: 0.1204

The information below is about HL_5J7L_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6Z1P|1|Ab|C|1057
6Z1P|1|Ab|G|1058
6Z1P|1|Ab|A|1059
6Z1P|1|Ab|A|1060
6Z1P|1|Ab|A|1061
6Z1P|1|Ab|G|1062

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AA

50S ribosomal protein L27